HL_6FTI_035

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_035 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.1397

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6FTI|1|u|A|2376
6FTI|1|u|C|2377
6FTI|1|u|G|2378
6FTI|1|u|A|2379
6FTI|1|u|G|2380
6FTI|1|u|A|2381
6FTI|1|u|A|2382
6FTI|1|u|C|2383
6FTI|1|u|U|2384

Current chains

Chain u

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31