HL_6FTI_048

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6FTI|1|u|U|2874

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_048 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1012

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

6FTI|1|u|C|2872
6FTI|1|u|U|2873
6FTI|1|u|U|2874
6FTI|1|u|C|2875
6FTI|1|u|G|2876
6FTI|1|u|G|2877

Current chains

Chain u

28S rRNA

Nearby chains

Chain n

60s ribosomal protein l41

Chain p

Ribosomal protein L37a