HL_6FTI_066

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_066 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FTI|1|u|C|4417
6FTI|1|u|G|4418
6FTI|1|u|U|4419
6FTI|1|u|U|4420
6FTI|1|u|C|4421
6FTI|1|u|A|4422
6FTI|1|u|U|4423
6FTI|1|u|A|4424
6FTI|1|u|G|4425

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain m

eL40