HL_6FTI_067

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

6FTI|1|u|G|4475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_067 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3716

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6FTI|1|u|A|4473
6FTI|1|u|A|4474
6FTI|1|u|G|4475
6FTI|1|u|C|4476
6FTI|1|u|A|4477
6FTI|1|u|G|4478
6FTI|1|u|A|4479
6FTI|1|u|A|4480
6FTI|1|u|U|4481

Current chains

Chain u

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40