HL_6FTJ_014
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 6FTJ|1|u|C|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTJ_014 not in the Motif Atlas
- Homologous match to HL_5TBW_014
- Geometric discrepancy: 0.0819
- The information below is about HL_5TBW_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6FTJ|1|u|U|1317
6FTJ|1|u|C|1318
6FTJ|1|u|U|1319
6FTJ|1|u|U|1320
6FTJ|1|u|G|1321
6FTJ|1|u|A|1322
6FTJ|1|u|A|1323
6FTJ|1|u|A|1324
6FTJ|1|u|C|1325
6FTJ|1|u|A|1326
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain a
- uL15
- Chain e
- eL32
Coloring options: