HL_6FTJ_022

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6FTJ|1|u|A|1630, 6FTJ|1|u|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_022 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0979

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FTJ|1|u|G|1627
6FTJ|1|u|C|1628
6FTJ|1|u|G|1629
6FTJ|1|u|A|1630
6FTJ|1|u|A|1631
6FTJ|1|u|A|1632
6FTJ|1|u|G|1633
6FTJ|1|u|A|1634
6FTJ|1|u|C|1635

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37