HL_6FTJ_050

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6FTJ|1|u|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_050 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1962

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6FTJ|1|u|G|3757
6FTJ|1|u|U|3758
6FTJ|1|u|A|3759
6FTJ|1|u|A|3760
6FTJ|1|u|C|3761
6FTJ|1|u|U|3762
6FTJ|1|u|A|3763
6FTJ|1|u|U|3764
6FTJ|1|u|G|3765
6FTJ|1|u|A|3766
6FTJ|1|u|C|3767

Current chains

Chain u

28S rRNA

Nearby chains