HL_6FTJ_052

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6FTJ|1|u|A|3876, 6FTJ|1|u|A|3877, 6FTJ|1|u|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_052 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0739

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6FTJ|1|u|G|3873
6FTJ|1|u|G|3874
6FTJ|1|u|G|3875
6FTJ|1|u|A|3876
6FTJ|1|u|A|3877
6FTJ|1|u|C|3878
6FTJ|1|u|G|3879
6FTJ|1|u|G|3880
6FTJ|1|u|G|3881
6FTJ|1|u|C|3882

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32