HL_6FTJ_064

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

6FTJ|1|u|G|4475

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_064 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3716

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6FTJ|1|u|A|4473
6FTJ|1|u|A|4474
6FTJ|1|u|G|4475
6FTJ|1|u|C|4476
6FTJ|1|u|A|4477
6FTJ|1|u|G|4478
6FTJ|1|u|A|4479
6FTJ|1|u|A|4480
6FTJ|1|u|U|4481

Current chains

Chain u

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40