HL_6FTJ_076
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6FTJ|1|w|A|82, 6FTJ|1|w|A|84, 6FTJ|1|w|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTJ_076 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4758
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6FTJ|1|w|G|68
6FTJ|1|w|U|69
6FTJ|1|w|G|70
6FTJ|1|w|A|71
6FTJ|1|w|A|72
6FTJ|1|w|U|73
6FTJ|1|w|U|74
6FTJ|1|w|G|75
6FTJ|1|w|C|76
6FTJ|1|w|A|77
6FTJ|1|w|G|78
6FTJ|1|w|G|79
6FTJ|1|w|A|80
6FTJ|1|w|C|81
6FTJ|1|w|A|82
6FTJ|1|w|C|83
6FTJ|1|w|A|84
6FTJ|1|w|U|85
6FTJ|1|w|U|86
6FTJ|1|w|G|87
6FTJ|1|w|A|88
6FTJ|1|w|U|89
6FTJ|1|w|C|90
Current chains
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- Ribosomal protein L26
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain y
- Protein transport protein Sec61 subunit gamma
Coloring options: