Motif HL_07882.1 Version HL_07882.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-16 | 4-12 | 4-15 | 5-12 | 11-12 | 13-14 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3NVK_001 | 3NVK | 0.8172 | 1 | K | RNA (34-mer) | C | 5 | U | 6 | G | 7 | A | 8 | C | 9 | C | 10 | G | 11 | A | 12 | A | 13 | A | 14 | G | 15 | G | 16 | C | 17 | G | 18 | G | 20 | A | 21 | U | 22 | G | 23 | ncWW | ntSH | ntHS | ncWW | ncSH | ncSs | ||
| 2 | HL_8C3A_075 | 8C3A | 0.0000 | 5 | 4 | 5.8S rRNA | A | 68 | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | A | 77 | G | 78 | A | 79 | A | 81 | U | 82 | U | 83 | G | 85 | G | 87 | A | 88 | A | 89 | U | 90 | cWW | ncWW | tSH | tSs | tHS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGACCGAAAGGCGUGAUG | 1 |
| AUGAAUUGCAGAUAUUCGUGAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGACCGAAAGGCGUGAU | 1 |
| UGAAUUGCAGAUAUUCGUGAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.82 | Avg 0.41 | Max 0.82
Coloring options: