HL_6FTJ_083
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTJ_083 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1404
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6FTJ|1|v|A|32
6FTJ|1|v|U|33
6FTJ|1|v|C|34
6FTJ|1|v|U|35
6FTJ|1|v|C|36
6FTJ|1|v|G|37
6FTJ|1|v|U|38
6FTJ|1|v|C|39
6FTJ|1|v|U|40
6FTJ|1|v|G|41
6FTJ|1|v|A|42
6FTJ|1|v|U|43
6FTJ|1|v|C|44
6FTJ|1|v|U|45
Current chains
- Chain v
- 5S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain J
- Ribosomal protein L11
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: