HL_6FXC_015

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_015 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1146

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FXC|1|AA|C|508
6FXC|1|AA|G|509
6FXC|1|AA|U|510
6FXC|1|AA|G|511
6FXC|1|AA|A|512
6FXC|1|AA|G|513

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AE

50S ribosomal protein L4