6FXC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FXC_001 | No text annotation | ||
| HL_6FXC_203 | Pseudoknot with intercalation | ||
| HL_6FXC_002 | No text annotation | ||
| HL_6FXC_003 | No text annotation | ||
| HL_6FXC_004 | GNRA wlth tandem sheared | ||
| HL_6FXC_005 | No text annotation | ||
| HL_6FXC_006 | No text annotation | ||
| HL_6FXC_007 | No text annotation | ||
| HL_6FXC_008 | No text annotation | ||
| HL_6FXC_009 | No text annotation | ||
| HL_6FXC_010 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_011 | No text annotation | ||
| HL_6FXC_012 | T-loop with unstacked turn | ||
| HL_6FXC_013 | No text annotation | ||
| HL_6FXC_204 | No text annotation | ||
| HL_6FXC_014 | No text annotation | ||
| HL_6FXC_015 | GNRA | ||
| HL_6FXC_016 | GNRA | ||
| HL_6FXC_017 | No text annotation | ||
| HL_6FXC_018 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_019 | No text annotation | ||
| HL_6FXC_020 | GNRA | ||
| HL_6FXC_021 | No text annotation | ||
| HL_6FXC_022 | No text annotation | ||
| HL_6FXC_023 | No text annotation | ||
| HL_6FXC_024 | No text annotation | ||
| HL_6FXC_205 | No text annotation | ||
| HL_6FXC_025 | No text annotation | ||
| HL_6FXC_026 | No text annotation | ||
| HL_6FXC_027 | GNRA | ||
| HL_6FXC_028 | No text annotation | ||
| HL_6FXC_029 | No text annotation | ||
| HL_6FXC_030 | Mini UNCG | ||
| HL_6FXC_031 | GNRA | ||
| HL_6FXC_032 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_033 | No text annotation | ||
| HL_6FXC_034 | GNRA | ||
| HL_6FXC_035 | No text annotation | ||
| HL_6FXC_036 | Pseudoknot geometry with 3' bulge | ||
| HL_6FXC_037 | Mini UNCG | ||
| HL_6FXC_038 | No text annotation | ||
| HL_6FXC_039 | GNRA with extra cWW | ||
| HL_6FXC_040 | UNCG | ||
| HL_6FXC_041 | No text annotation | ||
| HL_6FXC_042 | No text annotation | ||
| HL_6FXC_043 | No text annotation | ||
| HL_6FXC_044 | GNRA | ||
| HL_6FXC_045 | No text annotation | ||
| HL_6FXC_046 | No text annotation | ||
| HL_6FXC_047 | No text annotation | ||
| HL_6FXC_206 | No text annotation | ||
| HL_6FXC_048 | No text annotation | ||
| HL_6FXC_207 | No text annotation | ||
| HL_6FXC_049 | No text annotation | ||
| HL_6FXC_050 | No text annotation | ||
| HL_6FXC_051 | No text annotation | ||
| HL_6FXC_052 | No text annotation | ||
| HL_6FXC_053 | No text annotation | ||
| HL_6FXC_221 | No text annotation | ||
| HL_6FXC_054 | Pseudoknot geometry | ||
| HL_6FXC_055 | GNRA with extra cWW | ||
| HL_6FXC_056 | GNRA | ||
| HL_6FXC_057 | No text annotation | ||
| HL_6FXC_058 | No text annotation | ||
| HL_6FXC_059 | GNRA variation | ||
| HL_6FXC_060 | No text annotation | ||
| HL_6FXC_061 | GNRA | ||
| HL_6FXC_062 | GNRA | ||
| HL_6FXC_063 | Ribsomal LSU H95 | ||
| HL_6FXC_064 | No text annotation | ||
| HL_6FXC_065 | No text annotation | ||
| HL_6FXC_066 | No text annotation | ||
| HL_6FXC_067 | GNRA | ||
| HL_6FXC_208 | No text annotation | ||
| HL_6FXC_068 | No text annotation | ||
| HL_6FXC_069 | No text annotation | ||
| HL_6FXC_070 | No text annotation | ||
| HL_6FXC_071 | No text annotation | ||
| HL_6FXC_072 | GNRA | ||
| HL_6FXC_073 | No text annotation | ||
| HL_6FXC_074 | No text annotation | ||
| HL_6FXC_075 | GNRA related | ||
| HL_6FXC_076 | GNRA | ||
| HL_6FXC_077 | No text annotation | ||
| HL_6FXC_078 | UNCG | ||
| HL_6FXC_079 | GNRA with extra cWW | ||
| HL_6FXC_080 | No text annotation | ||
| HL_6FXC_081 | No text annotation | ||
| HL_6FXC_082 | No text annotation | ||
| HL_6FXC_083 | GNRA-like with tWH | ||
| HL_6FXC_084 | No text annotation | ||
| HL_6FXC_085 | GNRA | ||
| HL_6FXC_086 | No text annotation | ||
| HL_6FXC_087 | No text annotation | ||
| HL_6FXC_222 | No text annotation | ||
| HL_6FXC_088 | GNRA | ||
| HL_6FXC_089 | GNRA | ||
| HL_6FXC_209 | No text annotation | ||
| HL_6FXC_090 | No text annotation | ||
| HL_6FXC_091 | No text annotation | ||
| HL_6FXC_092 | No text annotation | ||
| HL_6FXC_093 | GNRA | ||
| HL_6FXC_094 | T-loop related | ||
| HL_6FXC_095 | No text annotation | ||
| HL_6FXC_096 | No text annotation | ||
| HL_6FXC_097 | GNRA | ||
| HL_6FXC_210 | No text annotation | ||
| HL_6FXC_098 | T-loop with 3 stacked bulged bases | ||
| HL_6FXC_099 | No text annotation | ||
| HL_6FXC_211 | No text annotation | ||
| HL_6FXC_100 | No text annotation | ||
| HL_6FXC_101 | GNRA | ||
| HL_6FXC_102 | No text annotation | ||
| HL_6FXC_212 | Pseudoknot with intercalation | ||
| HL_6FXC_103 | No text annotation | ||
| HL_6FXC_104 | No text annotation | ||
| HL_6FXC_105 | GNRA wlth tandem sheared | ||
| HL_6FXC_106 | No text annotation | ||
| HL_6FXC_107 | No text annotation | ||
| HL_6FXC_108 | No text annotation | ||
| HL_6FXC_109 | No text annotation | ||
| HL_6FXC_110 | No text annotation | ||
| HL_6FXC_111 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_112 | No text annotation | ||
| HL_6FXC_113 | T-loop with unstacked turn | ||
| HL_6FXC_114 | No text annotation | ||
| HL_6FXC_213 | No text annotation | ||
| HL_6FXC_115 | No text annotation | ||
| HL_6FXC_116 | GNRA | ||
| HL_6FXC_117 | GNRA | ||
| HL_6FXC_118 | No text annotation | ||
| HL_6FXC_119 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_120 | No text annotation | ||
| HL_6FXC_121 | GNRA | ||
| HL_6FXC_122 | No text annotation | ||
| HL_6FXC_123 | No text annotation | ||
| HL_6FXC_124 | No text annotation | ||
| HL_6FXC_125 | No text annotation | ||
| HL_6FXC_214 | No text annotation | ||
| HL_6FXC_126 | No text annotation | ||
| HL_6FXC_127 | No text annotation | ||
| HL_6FXC_128 | GNRA | ||
| HL_6FXC_129 | No text annotation | ||
| HL_6FXC_130 | No text annotation | ||
| HL_6FXC_131 | Mini UNCG | ||
| HL_6FXC_132 | GNRA | ||
| HL_6FXC_133 | T-loop with 2 stacked bulged bases | ||
| HL_6FXC_134 | No text annotation | ||
| HL_6FXC_135 | GNRA | ||
| HL_6FXC_136 | No text annotation | ||
| HL_6FXC_137 | Pseudoknot geometry with 3' bulge | ||
| HL_6FXC_138 | Mini UNCG | ||
| HL_6FXC_139 | No text annotation | ||
| HL_6FXC_140 | GNRA with extra cWW | ||
| HL_6FXC_141 | UNCG | ||
| HL_6FXC_142 | No text annotation | ||
| HL_6FXC_143 | No text annotation | ||
| HL_6FXC_144 | No text annotation | ||
| HL_6FXC_145 | GNRA | ||
| HL_6FXC_146 | No text annotation | ||
| HL_6FXC_147 | No text annotation | ||
| HL_6FXC_148 | No text annotation | ||
| HL_6FXC_215 | No text annotation | ||
| HL_6FXC_149 | No text annotation | ||
| HL_6FXC_216 | No text annotation | ||
| HL_6FXC_150 | No text annotation | ||
| HL_6FXC_151 | No text annotation | ||
| HL_6FXC_152 | No text annotation | ||
| HL_6FXC_153 | No text annotation | ||
| HL_6FXC_154 | No text annotation | ||
| HL_6FXC_223 | No text annotation | ||
| HL_6FXC_155 | Pseudoknot geometry | ||
| HL_6FXC_156 | GNRA with extra cWW | ||
| HL_6FXC_157 | GNRA | ||
| HL_6FXC_158 | No text annotation | ||
| HL_6FXC_159 | No text annotation | ||
| HL_6FXC_160 | GNRA variation | ||
| HL_6FXC_161 | No text annotation | ||
| HL_6FXC_162 | GNRA | ||
| HL_6FXC_163 | GNRA | ||
| HL_6FXC_164 | Ribsomal LSU H95 | ||
| HL_6FXC_165 | No text annotation | ||
| HL_6FXC_166 | No text annotation | ||
| HL_6FXC_167 | No text annotation | ||
| HL_6FXC_168 | GNRA | ||
| HL_6FXC_217 | No text annotation | ||
| HL_6FXC_169 | No text annotation | ||
| HL_6FXC_170 | No text annotation | ||
| HL_6FXC_171 | No text annotation | ||
| HL_6FXC_172 | No text annotation | ||
| HL_6FXC_173 | GNRA | ||
| HL_6FXC_174 | No text annotation | ||
| HL_6FXC_175 | No text annotation | ||
| HL_6FXC_176 | GNRA related | ||
| HL_6FXC_177 | GNRA | ||
| HL_6FXC_178 | No text annotation | ||
| HL_6FXC_179 | UNCG | ||
| HL_6FXC_180 | GNRA with extra cWW | ||
| HL_6FXC_181 | UNCG | ||
| HL_6FXC_182 | No text annotation | ||
| HL_6FXC_183 | No text annotation | ||
| HL_6FXC_184 | GNRA-like with tWH | ||
| HL_6FXC_185 | No text annotation | ||
| HL_6FXC_186 | GNRA | ||
| HL_6FXC_187 | No text annotation | ||
| HL_6FXC_188 | Externally structured | ||
| HL_6FXC_189 | GNRA | ||
| HL_6FXC_190 | GNRA | ||
| HL_6FXC_218 | No text annotation | ||
| HL_6FXC_191 | No text annotation | ||
| HL_6FXC_192 | No text annotation | ||
| HL_6FXC_193 | No text annotation | ||
| HL_6FXC_194 | GNRA | ||
| HL_6FXC_195 | T-loop related | ||
| HL_6FXC_196 | No text annotation | ||
| HL_6FXC_197 | No text annotation | ||
| HL_6FXC_198 | GNRA | ||
| HL_6FXC_219 | No text annotation | ||
| HL_6FXC_199 | T-loop with 3 stacked bulged bases | ||
| HL_6FXC_200 | No text annotation | ||
| HL_6FXC_220 | No text annotation | ||
| HL_6FXC_201 | No text annotation | ||
| HL_6FXC_202 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6FXC_001 | Triple sheared with non-canonical cWW | ||
| IL_6FXC_002 | Single bulged A | ||
| IL_6FXC_003 | Minor groove platform with extra cWW | ||
| IL_6FXC_004 | Kink-turn | ||
| IL_6FXC_365 | Kink-turn | ||
| IL_6FXC_005 | Major groove platform | ||
| IL_6FXC_006 | Isolated cWH basepair | ||
| IL_6FXC_007 | Single stack bend | ||
| IL_6FXC_008 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_009 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_010 | Minor groove platform | ||
| IL_6FXC_011 | No text annotation | ||
| IL_6FXC_012 | No text annotation | ||
| IL_6FXC_013 | No text annotation | ||
| IL_6FXC_335 | Isolated cWH basepair | ||
| IL_6FXC_014 | No text annotation | ||
| IL_6FXC_015 | Double sheared | ||
| IL_6FXC_016 | Isolated non-canonical cWW pair | ||
| IL_6FXC_017 | Isolated non-canonical cWW pair | ||
| IL_6FXC_018 | AAA cross-strand stack | ||
| IL_6FXC_019 | Isolated non-canonical cWW pair | ||
| IL_6FXC_020 | tHW-tHW cross-strand stack | ||
| IL_6FXC_021 | Single bulged A | ||
| IL_6FXC_022 | Single bulged G | ||
| IL_6FXC_023 | Triple sheared | ||
| IL_6FXC_024 | Major groove platform | ||
| IL_6FXC_025 | Multiple bulged bases | ||
| IL_6FXC_026 | No text annotation | ||
| IL_6FXC_027 | No text annotation | ||
| IL_6FXC_028 | No text annotation | ||
| IL_6FXC_029 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6FXC_030 | Minor groove platform | ||
| IL_6FXC_031 | C-loop | ||
| IL_6FXC_336 | Isolated cWS basepair | ||
| IL_6FXC_032 | Double sheared with non-canonical cWW | ||
| IL_6FXC_033 | Single bulged C | ||
| IL_6FXC_034 | UAA/GAN | ||
| IL_6FXC_035 | SSU/LSU pseudoknot | ||
| IL_6FXC_036 | Single bulged U | ||
| IL_6FXC_037 | Kink-turn related | ||
| IL_6FXC_038 | No text annotation | ||
| IL_6FXC_366 | Single stack bend | ||
| IL_6FXC_039 | Other IL | ||
| IL_6FXC_040 | Isolated non-canonical cWW pair | ||
| IL_6FXC_337 | No text annotation | ||
| IL_6FXC_367 | No text annotation | ||
| IL_6FXC_041 | Isolated cWS basepair | ||
| IL_6FXC_042 | Isolated cWH basepair | ||
| IL_6FXC_043 | Kink-turn | ||
| IL_6FXC_044 | Intercalated cWW | ||
| IL_6FXC_045 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_046 | Major groove minor groove platform with tHH | ||
| IL_6FXC_047 | UAA/GAN | ||
| IL_6FXC_048 | tSH-tHW-tHS | ||
| IL_6FXC_368 | No text annotation | ||
| IL_6FXC_049 | No text annotation | ||
| IL_6FXC_050 | tSH-tHW | ||
| IL_6FXC_051 | No text annotation | ||
| IL_6FXC_052 | No text annotation | ||
| IL_6FXC_338 | No text annotation | ||
| IL_6FXC_053 | No text annotation | ||
| IL_6FXC_339 | No text annotation | ||
| IL_6FXC_054 | No text annotation | ||
| IL_6FXC_055 | tSH-tHW-tHS | ||
| IL_6FXC_056 | No text annotation | ||
| IL_6FXC_340 | No text annotation | ||
| IL_6FXC_057 | No text annotation | ||
| IL_6FXC_058 | No text annotation | ||
| IL_6FXC_059 | Isolated tWW turn | ||
| IL_6FXC_060 | Major groove platform; stack outside cWW | ||
| IL_6FXC_341 | No text annotation | ||
| IL_6FXC_061 | Intercalated tWH | ||
| IL_6FXC_062 | tSH-tSH-tHH-tHS | ||
| IL_6FXC_063 | No text annotation | ||
| IL_6FXC_064 | Single bulged A | ||
| IL_6FXC_065 | Kink-turn related | ||
| IL_6FXC_066 | Minor groove platform, major groove intercalation | ||
| IL_6FXC_067 | Major groove intercalation | ||
| IL_6FXC_068 | No text annotation | ||
| IL_6FXC_069 | UAA/GAN with extra stack | ||
| IL_6FXC_070 | Triple sheared | ||
| IL_6FXC_071 | No text annotation | ||
| IL_6FXC_072 | Major groove platform | ||
| IL_6FXC_073 | No text annotation | ||
| IL_6FXC_074 | Single bulged U | ||
| IL_6FXC_075 | Minor groove platform | ||
| IL_6FXC_076 | Isolated tHS basepair with bulges | ||
| IL_6FXC_077 | Isolated non-canonical cWW pair | ||
| IL_6FXC_342 | No text annotation | ||
| IL_6FXC_078 | No text annotation | ||
| IL_6FXC_079 | Single bulged G | ||
| IL_6FXC_080 | Isolated tHS basepair with bulges | ||
| IL_6FXC_081 | Double sheared | ||
| IL_6FXC_082 | Single bulged U | ||
| IL_6FXC_083 | Single stack bend | ||
| IL_6FXC_084 | Major groove platform | ||
| IL_6FXC_085 | Major groove platform | ||
| IL_6FXC_086 | Major groove minor groove platform with extra cWW | ||
| IL_6FXC_087 | Double sheared with non-canonical cWW | ||
| IL_6FXC_088 | Major groove platform | ||
| IL_6FXC_089 | Isolated non-canonical cWW with bulges | ||
| IL_6FXC_090 | No text annotation | ||
| IL_6FXC_091 | Major groove platform with intercalation | ||
| IL_6FXC_092 | Single bulged A | ||
| IL_6FXC_093 | tSH-tHS-tHW | ||
| IL_6FXC_094 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6FXC_095 | C-loop | ||
| IL_6FXC_096 | No text annotation | ||
| IL_6FXC_097 | Multiple bulged bases | ||
| IL_6FXC_098 | UAA/GAN with extra cWW | ||
| IL_6FXC_099 | Major groove intercalation | ||
| IL_6FXC_100 | No text annotation | ||
| IL_6FXC_101 | tHS double platform | ||
| IL_6FXC_102 | Major groove intercalation | ||
| IL_6FXC_103 | No text annotation | ||
| IL_6FXC_104 | Major groove minor groove platform; mini C-loop | ||
| IL_6FXC_105 | Symmetric double minor groove platform | ||
| IL_6FXC_106 | Bacterial 5S Loop E | ||
| IL_6FXC_107 | Isolated non-canonical cWW pair | ||
| IL_6FXC_108 | Single bulged G | ||
| IL_6FXC_109 | Single bulged A | ||
| IL_6FXC_110 | No text annotation | ||
| IL_6FXC_111 | No text annotation | ||
| IL_6FXC_112 | Multiple bulged bases | ||
| IL_6FXC_113 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_114 | Multiple bulged bases | ||
| IL_6FXC_115 | Minor groove platform related | ||
| IL_6FXC_116 | tWH-tWH-tHW-tHW | ||
| IL_6FXC_343 | Single stack bend | ||
| IL_6FXC_344 | No text annotation | ||
| IL_6FXC_117 | No text annotation | ||
| IL_6FXC_118 | Kink-turn with non-sequential stacking | ||
| IL_6FXC_119 | No text annotation | ||
| IL_6FXC_345 | No text annotation | ||
| IL_6FXC_120 | C-loop | ||
| IL_6FXC_121 | Single bulged U | ||
| IL_6FXC_122 | C-loop | ||
| IL_6FXC_123 | Single bulged G | ||
| IL_6FXC_124 | No text annotation | ||
| IL_6FXC_125 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_346 | No text annotation | ||
| IL_6FXC_126 | SSU/LSU pseudoknot | ||
| IL_6FXC_127 | Kink-turn related | ||
| IL_6FXC_128 | No text annotation | ||
| IL_6FXC_129 | tSH-tHW-tHS | ||
| IL_6FXC_130 | Isolated non-canonical cWW pair | ||
| IL_6FXC_131 | Major groove platform | ||
| IL_6FXC_132 | Major groove minor groove platform; mini C-loop | ||
| IL_6FXC_133 | No text annotation | ||
| IL_6FXC_134 | Major groove platform; stack outside cWW | ||
| IL_6FXC_135 | Major groove platform | ||
| IL_6FXC_136 | Partly complementary | ||
| IL_6FXC_347 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_348 | Triple non-canonical cWW pairs | ||
| IL_6FXC_137 | No text annotation | ||
| IL_6FXC_138 | Kink-turn | ||
| IL_6FXC_139 | Other IL | ||
| IL_6FXC_140 | tSH-tHW-tHS | ||
| IL_6FXC_141 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6FXC_142 | Single bulged A | ||
| IL_6FXC_143 | Single bulged G | ||
| IL_6FXC_144 | Minor groove platform | ||
| IL_6FXC_145 | No text annotation | ||
| IL_6FXC_146 | Minor groove platform | ||
| IL_6FXC_369 | No text annotation | ||
| IL_6FXC_147 | No text annotation | ||
| IL_6FXC_148 | Single bulged U | ||
| IL_6FXC_149 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_150 | Minor groove platform | ||
| IL_6FXC_151 | Single bulged A | ||
| IL_6FXC_152 | Isolated non-canonical cWW pair | ||
| IL_6FXC_370 | No text annotation | ||
| IL_6FXC_349 | No text annotation | ||
| IL_6FXC_153 | No text annotation | ||
| IL_6FXC_154 | No text annotation | ||
| IL_6FXC_155 | tSH-tHW-tHS-cWW | ||
| IL_6FXC_156 | No text annotation | ||
| IL_6FXC_157 | No text annotation | ||
| IL_6FXC_158 | No text annotation | ||
| IL_6FXC_159 | Isolated non-canonical cWW pair | ||
| IL_6FXC_160 | No text annotation | ||
| IL_6FXC_161 | Isolated non-canonical cWW pair | ||
| IL_6FXC_162 | Double sheared | ||
| IL_6FXC_163 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_164 | Triple sheared related | ||
| IL_6FXC_165 | Isolated non-canonical cWW pair | ||
| IL_6FXC_166 | No text annotation | ||
| IL_6FXC_167 | No text annotation | ||
| IL_6FXC_168 | Triple sheared with non-canonical cWW | ||
| IL_6FXC_169 | Single bulged A | ||
| IL_6FXC_170 | Minor groove platform with extra cWW | ||
| IL_6FXC_171 | Kink-turn | ||
| IL_6FXC_371 | Kink-turn | ||
| IL_6FXC_172 | Major groove platform | ||
| IL_6FXC_173 | Isolated cWH basepair | ||
| IL_6FXC_174 | Single stack bend | ||
| IL_6FXC_175 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_176 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_177 | Minor groove platform | ||
| IL_6FXC_178 | No text annotation | ||
| IL_6FXC_179 | No text annotation | ||
| IL_6FXC_180 | No text annotation | ||
| IL_6FXC_350 | Isolated cWH basepair | ||
| IL_6FXC_181 | No text annotation | ||
| IL_6FXC_182 | Double sheared | ||
| IL_6FXC_183 | Isolated non-canonical cWW pair | ||
| IL_6FXC_184 | Isolated non-canonical cWW pair | ||
| IL_6FXC_185 | AAA cross-strand stack | ||
| IL_6FXC_186 | Isolated non-canonical cWW pair | ||
| IL_6FXC_187 | tHW-tHW cross-strand stack | ||
| IL_6FXC_188 | Single bulged A | ||
| IL_6FXC_189 | Single bulged G | ||
| IL_6FXC_190 | Triple sheared | ||
| IL_6FXC_191 | Major groove platform | ||
| IL_6FXC_192 | Multiple bulged bases | ||
| IL_6FXC_193 | No text annotation | ||
| IL_6FXC_194 | No text annotation | ||
| IL_6FXC_195 | No text annotation | ||
| IL_6FXC_196 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6FXC_197 | Minor groove platform | ||
| IL_6FXC_198 | C-loop | ||
| IL_6FXC_351 | Isolated cWS basepair | ||
| IL_6FXC_199 | Double sheared with non-canonical cWW | ||
| IL_6FXC_200 | Single bulged C | ||
| IL_6FXC_201 | UAA/GAN | ||
| IL_6FXC_202 | SSU/LSU pseudoknot | ||
| IL_6FXC_203 | Single bulged U | ||
| IL_6FXC_204 | Kink-turn related | ||
| IL_6FXC_205 | No text annotation | ||
| IL_6FXC_372 | Single stack bend | ||
| IL_6FXC_206 | Other IL | ||
| IL_6FXC_207 | Isolated non-canonical cWW pair | ||
| IL_6FXC_352 | No text annotation | ||
| IL_6FXC_373 | No text annotation | ||
| IL_6FXC_208 | Isolated cWS basepair | ||
| IL_6FXC_209 | Isolated cWH basepair | ||
| IL_6FXC_210 | Kink-turn | ||
| IL_6FXC_211 | Intercalated cWW | ||
| IL_6FXC_212 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_213 | Major groove minor groove platform with tHH | ||
| IL_6FXC_214 | UAA/GAN | ||
| IL_6FXC_215 | tSH-tHW-tHS | ||
| IL_6FXC_374 | No text annotation | ||
| IL_6FXC_216 | No text annotation | ||
| IL_6FXC_217 | Other IL | ||
| IL_6FXC_218 | No text annotation | ||
| IL_6FXC_219 | No text annotation | ||
| IL_6FXC_353 | No text annotation | ||
| IL_6FXC_220 | No text annotation | ||
| IL_6FXC_354 | No text annotation | ||
| IL_6FXC_221 | No text annotation | ||
| IL_6FXC_222 | tSH-tHW-tHS | ||
| IL_6FXC_223 | No text annotation | ||
| IL_6FXC_355 | No text annotation | ||
| IL_6FXC_224 | No text annotation | ||
| IL_6FXC_225 | No text annotation | ||
| IL_6FXC_226 | Isolated tWW turn | ||
| IL_6FXC_227 | Major groove platform; stack outside cWW | ||
| IL_6FXC_356 | No text annotation | ||
| IL_6FXC_228 | Intercalated tWH | ||
| IL_6FXC_229 | tSH-tSH-tHH-tHS | ||
| IL_6FXC_230 | No text annotation | ||
| IL_6FXC_231 | Single bulged A | ||
| IL_6FXC_232 | Kink-turn related | ||
| IL_6FXC_233 | Minor groove platform, major groove intercalation | ||
| IL_6FXC_234 | Major groove intercalation | ||
| IL_6FXC_235 | No text annotation | ||
| IL_6FXC_236 | UAA/GAN with extra stack | ||
| IL_6FXC_237 | Triple sheared | ||
| IL_6FXC_238 | No text annotation | ||
| IL_6FXC_239 | Major groove platform | ||
| IL_6FXC_240 | No text annotation | ||
| IL_6FXC_241 | Single bulged U | ||
| IL_6FXC_242 | Minor groove platform | ||
| IL_6FXC_243 | Isolated tHS basepair with bulges | ||
| IL_6FXC_244 | Isolated non-canonical cWW pair | ||
| IL_6FXC_357 | No text annotation | ||
| IL_6FXC_245 | No text annotation | ||
| IL_6FXC_246 | Single bulged G | ||
| IL_6FXC_247 | Isolated tHS basepair with bulges | ||
| IL_6FXC_248 | Double sheared | ||
| IL_6FXC_249 | Single bulged U | ||
| IL_6FXC_250 | Single stack bend | ||
| IL_6FXC_251 | Major groove platform | ||
| IL_6FXC_252 | Major groove platform | ||
| IL_6FXC_253 | Major groove minor groove platform with extra cWW | ||
| IL_6FXC_254 | Double sheared with non-canonical cWW | ||
| IL_6FXC_255 | Major groove platform | ||
| IL_6FXC_256 | Isolated non-canonical cWW with bulges | ||
| IL_6FXC_257 | No text annotation | ||
| IL_6FXC_258 | Major groove platform with intercalation | ||
| IL_6FXC_259 | Single bulged A | ||
| IL_6FXC_260 | tSH-tHS-tHW | ||
| IL_6FXC_261 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6FXC_262 | C-loop | ||
| IL_6FXC_263 | No text annotation | ||
| IL_6FXC_264 | Multiple bulged bases | ||
| IL_6FXC_265 | UAA/GAN with extra cWW | ||
| IL_6FXC_266 | Major groove intercalation | ||
| IL_6FXC_267 | No text annotation | ||
| IL_6FXC_268 | tHS double platform | ||
| IL_6FXC_269 | Major groove intercalation | ||
| IL_6FXC_270 | No text annotation | ||
| IL_6FXC_271 | Major groove minor groove platform; mini C-loop | ||
| IL_6FXC_272 | Symmetric double minor groove platform | ||
| IL_6FXC_273 | Bacterial 5S Loop E | ||
| IL_6FXC_274 | Isolated non-canonical cWW pair | ||
| IL_6FXC_275 | Single bulged G | ||
| IL_6FXC_276 | Single bulged A | ||
| IL_6FXC_277 | No text annotation | ||
| IL_6FXC_278 | No text annotation | ||
| IL_6FXC_279 | Multiple bulged bases | ||
| IL_6FXC_280 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_281 | Multiple bulged bases | ||
| IL_6FXC_282 | Minor groove platform related | ||
| IL_6FXC_283 | tWH-tWH-tHW-tHW | ||
| IL_6FXC_358 | Single stack bend | ||
| IL_6FXC_359 | No text annotation | ||
| IL_6FXC_284 | No text annotation | ||
| IL_6FXC_285 | Kink-turn with non-sequential stacking | ||
| IL_6FXC_286 | No text annotation | ||
| IL_6FXC_360 | No text annotation | ||
| IL_6FXC_287 | C-loop | ||
| IL_6FXC_288 | Single bulged U | ||
| IL_6FXC_289 | C-loop | ||
| IL_6FXC_290 | Single bulged G | ||
| IL_6FXC_291 | No text annotation | ||
| IL_6FXC_292 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6FXC_361 | No text annotation | ||
| IL_6FXC_293 | SSU/LSU pseudoknot | ||
| IL_6FXC_294 | Kink-turn related | ||
| IL_6FXC_295 | No text annotation | ||
| IL_6FXC_296 | tSH-tHW-tHS | ||
| IL_6FXC_297 | Isolated non-canonical cWW pair | ||
| IL_6FXC_298 | Major groove platform | ||
| IL_6FXC_299 | Major groove minor groove platform; mini C-loop | ||
| IL_6FXC_300 | No text annotation | ||
| IL_6FXC_301 | Major groove platform; stack outside cWW | ||
| IL_6FXC_302 | Major groove platform | ||
| IL_6FXC_303 | Partly complementary | ||
| IL_6FXC_362 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_363 | Triple non-canonical cWW pairs | ||
| IL_6FXC_304 | No text annotation | ||
| IL_6FXC_305 | Kink-turn | ||
| IL_6FXC_306 | Other IL | ||
| IL_6FXC_307 | tSH-tHW-tHS | ||
| IL_6FXC_308 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6FXC_309 | Single bulged A | ||
| IL_6FXC_310 | Single bulged G | ||
| IL_6FXC_311 | Minor groove platform | ||
| IL_6FXC_312 | No text annotation | ||
| IL_6FXC_313 | Minor groove platform | ||
| IL_6FXC_375 | No text annotation | ||
| IL_6FXC_314 | No text annotation | ||
| IL_6FXC_315 | Single bulged U | ||
| IL_6FXC_316 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_317 | Minor groove platform | ||
| IL_6FXC_318 | Single bulged U | ||
| IL_6FXC_319 | Isolated non-canonical cWW pair | ||
| IL_6FXC_376 | No text annotation | ||
| IL_6FXC_364 | No text annotation | ||
| IL_6FXC_320 | No text annotation | ||
| IL_6FXC_321 | No text annotation | ||
| IL_6FXC_322 | tSH-tHW-tHS-cWW | ||
| IL_6FXC_323 | No text annotation | ||
| IL_6FXC_324 | No text annotation | ||
| IL_6FXC_325 | No text annotation | ||
| IL_6FXC_326 | Isolated non-canonical cWW pair | ||
| IL_6FXC_327 | No text annotation | ||
| IL_6FXC_328 | Isolated non-canonical cWW pair | ||
| IL_6FXC_329 | Double sheared | ||
| IL_6FXC_330 | Tandem non-canonical cWW pairs | ||
| IL_6FXC_331 | Triple sheared related | ||
| IL_6FXC_332 | Isolated non-canonical cWW pair | ||
| IL_6FXC_333 | No text annotation | ||
| IL_6FXC_334 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6FXC_001 | No text annotation | ||
| J3_6FXC_049 | No text annotation | ||
| J3_6FXC_050 | No text annotation | ||
| J3_6FXC_002 | No text annotation | ||
| J3_6FXC_003 | No text annotation | ||
| J3_6FXC_004 | No text annotation | ||
| J3_6FXC_005 | No text annotation | ||
| J3_6FXC_006 | No text annotation | ||
| J3_6FXC_007 | No text annotation | ||
| J3_6FXC_051 | No text annotation | ||
| J3_6FXC_052 | No text annotation | ||
| J3_6FXC_008 | No text annotation | ||
| J3_6FXC_053 | No text annotation | ||
| J3_6FXC_009 | No text annotation | ||
| J3_6FXC_010 | No text annotation | ||
| J3_6FXC_011 | No text annotation | ||
| J3_6FXC_012 | No text annotation | ||
| J3_6FXC_013 | No text annotation | ||
| J3_6FXC_014 | No text annotation | ||
| J3_6FXC_054 | No text annotation | ||
| J3_6FXC_055 | No text annotation | ||
| J3_6FXC_015 | No text annotation | ||
| J3_6FXC_056 | No text annotation | ||
| J3_6FXC_016 | No text annotation | ||
| J3_6FXC_017 | No text annotation | ||
| J3_6FXC_018 | No text annotation | ||
| J3_6FXC_019 | No text annotation | ||
| J3_6FXC_020 | No text annotation | ||
| J3_6FXC_021 | No text annotation | ||
| J3_6FXC_057 | No text annotation | ||
| J3_6FXC_073 | No text annotation | ||
| J3_6FXC_058 | No text annotation | ||
| J3_6FXC_022 | No text annotation | ||
| J3_6FXC_059 | No text annotation | ||
| J3_6FXC_023 | No text annotation | ||
| J3_6FXC_024 | No text annotation | ||
| J3_6FXC_060 | No text annotation | ||
| J3_6FXC_025 | No text annotation | ||
| J3_6FXC_061 | No text annotation | ||
| J3_6FXC_062 | No text annotation | ||
| J3_6FXC_026 | No text annotation | ||
| J3_6FXC_027 | No text annotation | ||
| J3_6FXC_028 | No text annotation | ||
| J3_6FXC_029 | No text annotation | ||
| J3_6FXC_030 | No text annotation | ||
| J3_6FXC_031 | No text annotation | ||
| J3_6FXC_063 | No text annotation | ||
| J3_6FXC_064 | No text annotation | ||
| J3_6FXC_032 | No text annotation | ||
| J3_6FXC_065 | No text annotation | ||
| J3_6FXC_033 | No text annotation | ||
| J3_6FXC_034 | No text annotation | ||
| J3_6FXC_035 | No text annotation | ||
| J3_6FXC_036 | No text annotation | ||
| J3_6FXC_037 | No text annotation | ||
| J3_6FXC_038 | No text annotation | ||
| J3_6FXC_066 | No text annotation | ||
| J3_6FXC_067 | No text annotation | ||
| J3_6FXC_039 | No text annotation | ||
| J3_6FXC_068 | No text annotation | ||
| J3_6FXC_040 | No text annotation | ||
| J3_6FXC_041 | No text annotation | ||
| J3_6FXC_042 | No text annotation | ||
| J3_6FXC_043 | No text annotation | ||
| J3_6FXC_044 | No text annotation | ||
| J3_6FXC_045 | No text annotation | ||
| J3_6FXC_069 | No text annotation | ||
| J3_6FXC_074 | No text annotation | ||
| J3_6FXC_070 | No text annotation | ||
| J3_6FXC_046 | No text annotation | ||
| J3_6FXC_071 | No text annotation | ||
| J3_6FXC_047 | No text annotation | ||
| J3_6FXC_048 | No text annotation | ||
| J3_6FXC_072 | No text annotation | ||
| J4_6FXC_001 | No text annotation | ||
| J4_6FXC_002 | No text annotation | ||
| J4_6FXC_003 | No text annotation | ||
| J4_6FXC_004 | No text annotation | ||
| J4_6FXC_005 | No text annotation | ||
| J4_6FXC_006 | No text annotation | ||
| J4_6FXC_007 | No text annotation | ||
| J4_6FXC_008 | No text annotation | ||
| J4_6FXC_009 | No text annotation | ||
| J4_6FXC_010 | No text annotation | ||
| J4_6FXC_011 | No text annotation | ||
| J4_6FXC_012 | No text annotation | ||
| J4_6FXC_013 | No text annotation | ||
| J4_6FXC_014 | No text annotation | ||
| J4_6FXC_015 | No text annotation | ||
| J4_6FXC_016 | No text annotation | ||
| J4_6FXC_017 | No text annotation | ||
| J4_6FXC_018 | No text annotation | ||
| J4_6FXC_019 | No text annotation | ||
| J4_6FXC_020 | No text annotation | ||
| J4_6FXC_021 | No text annotation | ||
| J4_6FXC_022 | No text annotation | ||
| J5_6FXC_001 | No text annotation | ||
| J5_6FXC_002 | No text annotation | ||
| J5_6FXC_003 | No text annotation | ||
| J5_6FXC_004 | No text annotation | ||
| J5_6FXC_005 | No text annotation | ||
| J5_6FXC_006 | No text annotation | ||
| J5_6FXC_007 | No text annotation | ||
| J5_6FXC_015 | No text annotation | ||
| J5_6FXC_008 | No text annotation | ||
| J5_6FXC_009 | No text annotation | ||
| J5_6FXC_010 | No text annotation | ||
| J5_6FXC_011 | No text annotation | ||
| J5_6FXC_012 | No text annotation | ||
| J5_6FXC_013 | No text annotation | ||
| J5_6FXC_014 | No text annotation | ||
| J5_6FXC_016 | No text annotation | ||
| J6_6FXC_001 | No text annotation | ||
| J6_6FXC_002 | No text annotation | ||
| J6_6FXC_003 | No text annotation | ||
| J6_6FXC_004 | No text annotation | ||
| J7_6FXC_001 | No text annotation | ||
| J7_6FXC_002 | No text annotation | ||
| J10_6FXC_001 | No text annotation | ||
| J10_6FXC_002 | No text annotation |
Coloring options: