HL_6FXC_028

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.091

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FXC|1|AA|G|1022
6FXC|1|AA|A|1023
6FXC|1|AA|A|1024
6FXC|1|AA|A|1025
6FXC|1|AA|C|1026
6FXC|1|AA|A|1027
6FXC|1|AA|G|1028
6FXC|1|AA|C|1029

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21

Chain AX

50S ribosomal protein L30