HL_6FXC_038

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6FXC|1|AA|A|1658, 6FXC|1|AA|A|1660, 6FXC|1|AA|A|1662

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1186

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6FXC|1|AA|C|1656
6FXC|1|AA|G|1657
6FXC|1|AA|A|1658
6FXC|1|AA|C|1659
6FXC|1|AA|A|1660
6FXC|1|AA|C|1661
6FXC|1|AA|A|1662
6FXC|1|AA|G|1663

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AQ

50S ribosomal protein L22