HL_6FXC_051

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6FXC|1|AA|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_051 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0922

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6FXC|1|AA|C|2275
6FXC|1|AA|U|2276
6FXC|1|AA|G|2277
6FXC|1|AA|G|2278
6FXC|1|AA|G|2279
6FXC|1|AA|G|2280
6FXC|1|AA|C|2281
6FXC|1|AA|G|2282
6FXC|1|AA|G|2283

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27