HL_6FXC_052

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6FXC|1|AA|A|2295, 6FXC|1|AA|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0811

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6FXC|1|AA|C|2291
6FXC|1|AA|U|2292
6FXC|1|AA|A|2293
6FXC|1|AA|A|2294
6FXC|1|AA|A|2295
6FXC|1|AA|A|2296
6FXC|1|AA|G|2297
6FXC|1|AA|G|2298
6FXC|1|AA|U|2299
6FXC|1|AA|A|2300
6FXC|1|AA|A|2301
6FXC|1|AA|C|2302
6FXC|1|AA|G|2303

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27