HL_6FXC_066

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6FXC|1|AA|A|2840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_066 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1066

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6FXC|1|AA|A|2839
6FXC|1|AA|A|2840
6FXC|1|AA|A|2841
6FXC|1|AA|G|2842
6FXC|1|AA|A|2843
6FXC|1|AA|U|2844
6FXC|1|AA|G|2845
6FXC|1|AA|A|2846
6FXC|1|AA|U|2847

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17