HL_6FXC_087
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GUUUCCGC
- Length
- 8 nucleotides
- Bulged bases
- 6FXC|1|Aa|C|852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FXC_087 not in the Motif Atlas
- Homologous match to HL_5J7L_018
- Geometric discrepancy: 0.5117
- The information below is about HL_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37344.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6FXC|1|Aa|G|848
6FXC|1|Aa|U|849
6FXC|1|Aa|U|850
6FXC|1|Aa|U|851
6FXC|1|Aa|C|852
6FXC|1|Aa|C|853
6FXC|1|Aa|G|854
6FXC|1|Aa|C|855
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ar
- 30S ribosomal protein S18
- Chain Ba
- Small subunit ribosomal RNA; SSU rRNA
- Chain Bb
- 30S ribosomal protein S2
- Chain Bv
- Ribosome hibernation promotion factor
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