HL_6FXC_104

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6FXC|1|BA|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_104 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1106

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6FXC|1|BA|G|122
6FXC|1|BA|G|123
6FXC|1|BA|A|124
6FXC|1|BA|A|125
6FXC|1|BA|A|126
6FXC|1|BA|C|127

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23