HL_6FXC_113

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

6FXC|1|BA|A|372, 6FXC|1|BA|A|373, 6FXC|1|BA|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_113 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1126

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6FXC|1|BA|G|370
6FXC|1|BA|U|371
6FXC|1|BA|A|372
6FXC|1|BA|A|373
6FXC|1|BA|U|374
6FXC|1|BA|A|375
6FXC|1|BA|A|376
6FXC|1|BA|U|377
6FXC|1|BA|C|378

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24