HL_6FXC_137

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6FXC|1|BA|C|1536, 6FXC|1|BA|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_137 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1096

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6FXC|1|BA|G|1535
6FXC|1|BA|C|1536
6FXC|1|BA|A|1537
6FXC|1|BA|A|1538
6FXC|1|BA|A|1539
6FXC|1|BA|U|1540
6FXC|1|BA|C|1541

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2