HL_6FXC_154

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGUUGAAAUC*C

Length

11 nucleotides

Bulged bases

6FXC|1|BA|U|2332

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_154 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.5291

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|BA|G|2330
6FXC|1|BA|G|2331
6FXC|1|BA|U|2332
6FXC|1|BA|U|2333
6FXC|1|BA|G|2334
6FXC|1|BA|A|2336
6FXC|1|BA|A|2337
6FXC|1|BA|A|2338
6FXC|1|BA|U|2339
6FXC|1|BA|C|2340
*
6FXC|1|BA|C|2340

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5