HL_6FXC_159

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_159 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1558

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6FXC|1|BA|A|2498
6FXC|1|BA|G|2499
6FXC|1|BA|U|2500
6FXC|1|BA|U|2501
6FXC|1|BA|C|2502
6FXC|1|BA|A|2503
6FXC|1|BA|C|2504
6FXC|1|BA|A|2505
6FXC|1|BA|U|2506

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BK

50S ribosomal protein L16