HL_6FXC_186

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_186 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0786

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FXC|1|Ba|C|734
6FXC|1|Ba|G|735
6FXC|1|Ba|A|736
6FXC|1|Ba|A|737
6FXC|1|Ba|G|738
6FXC|1|Ba|G|739

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bo

30S ribosomal protein S15

Chain Br

30S ribosomal protein S18

Chain Bu

30S ribosomal protein S21