HL_6FXC_192

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_192 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2168

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6FXC|1|Ba|A|1021
6FXC|1|Ba|G|1022
6FXC|1|Ba|A|1023
6FXC|1|Ba|G|1024
6FXC|1|Ba|A|1025
6FXC|1|Ba|U|1026

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bn

30S ribosomal protein S14 type Z

Chain Bs

30S ribosomal protein S19