HL_6FYX_023
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FYX_023 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1381
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6FYX|1|2|A|899
6FYX|1|2|G|900
6FYX|1|2|G|901
6FYX|1|2|U|902
6FYX|1|2|G|903
6FYX|1|2|A|904
6FYX|1|2|A|905
6FYX|1|2|A|906
6FYX|1|2|U|907
6FYX|1|2|U|908
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (31-MER)
- Chain B
- 40S ribosomal protein S1
- Chain F
- KLLA0D10659p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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