HL_6FYX_029

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC(C4J)CAACAC

Length

10 nucleotides

Bulged bases

6FYX|1|2|A|1195

QA status

Modified nucleotides: C4J

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYX_029 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.1541

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6FYX|1|2|G|1187
6FYX|1|2|A|1188
6FYX|1|2|C|1189
6FYX|1|2|C4J|1190
6FYX|1|2|C|1191
6FYX|1|2|A|1192
6FYX|1|2|A|1193
6FYX|1|2|C|1194
6FYX|1|2|A|1195
6FYX|1|2|C|1196

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain Q

40S ribosomal protein S16

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain i

Eukaryotic translation initiation factor 1A