HL_8C3A_217

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases (A, C, G, U)

1181A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73530.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8C3A|1|CM|G|1173
8C3A|1|CM|A|1174
8C3A|1|CM|C|1175
8C3A|1|CM|U|1176
8C3A|1|CM|C|1177
8C3A|1|CM|A|1178
8C3A|1|CM|A|1179
8C3A|1|CM|C|1180
8C3A|1|CM|A|1181
8C3A|1|CM|C|1182

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain DD

40S ribosomal protein S16

Chain DH

Ribosomal protein S10

Chain DQ

40S ribosomal protein S29A