HL_6FYY_002
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GCUCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FYY_002 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.094
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6FYY|1|1|G|31
6FYY|1|1|C|32
6FYY|1|1|U|33
6FYY|1|1|C|34
6FYY|1|1|A|35
6FYY|1|1|U|36
6FYY|1|1|T6A|37
6FYY|1|1|A|38
6FYY|1|1|C|39
Current chains
- Chain 1
- tRNAi
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA (31-MER)
- Chain Q
- 40S ribosomal protein S16
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor 5
Coloring options: