HL_6FYY_007

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6FYY|1|2|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_007 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5683

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6FYY|1|2|C|189
6FYY|1|2|C|190
6FYY|1|2|U|191
6FYY|1|2|U|192
6FYY|1|2|U|193
6FYY|1|2|G|194

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8