HL_6FYY_008

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6FYY|1|2|U|231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_008 not in the Motif Atlas

Geometric match to HL_3SKI_003

Geometric discrepancy: 0.3272

The information below is about HL_3SKI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14333.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6FYY|1|2|C|229
6FYY|1|2|U|230
6FYY|1|2|U|231
6FYY|1|2|C|232
6FYY|1|2|G|233
6FYY|1|2|G|234

Current chains

Chain 2

18S ribosomal RNA

Nearby chains