3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
6FYY|1|2|G|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FYY_013 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.084
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6FYY|1|2|C|392
6FYY|1|2|C|393
6FYY|1|2|U|394
6FYY|1|2|G|395
6FYY|1|2|A|396
6FYY|1|2|G|397
6FYY|1|2|A|398
6FYY|1|2|A|399
6FYY|1|2|A|400
6FYY|1|2|C|401
6FYY|1|2|G|402
6FYY|1|2|G|403

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain E
40S ribosomal protein S4
Chain G
40S ribosomal protein S6
Chain I
40S ribosomal protein S8
Chain Y
40S ribosomal protein S24

Coloring options:


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