HL_6FYY_016

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

6FYY|1|2|A|491, 6FYY|1|2|U|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_016 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5858

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6FYY|1|2|C|490
6FYY|1|2|A|491
6FYY|1|2|U|492
6FYY|1|2|U|493
6FYY|1|2|C|494
6FYY|1|2|G|495

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

mRNA (31-MER)