HL_6FYY_018

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_018 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1165

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FYY|1|2|C|568
6FYY|1|2|A|569
6FYY|1|2|G|570
6FYY|1|2|C|571
6FYY|1|2|C|572
6FYY|1|2|G|573

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

mRNA (31-MER)

Chain X

KLLA0B11231p