HL_6FYY_029
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GAC(C4J)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6FYY|1|2|A|1195
- QA status
- Modified nucleotides: C4J
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FYY_029 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1551
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FYY|1|2|G|1187
6FYY|1|2|A|1188
6FYY|1|2|C|1189
6FYY|1|2|C4J|1190
6FYY|1|2|C|1191
6FYY|1|2|A|1192
6FYY|1|2|A|1193
6FYY|1|2|C|1194
6FYY|1|2|A|1195
6FYY|1|2|C|1196
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- 40S ribosomal protein S16
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain i
- Eukaryotic translation initiation factor 1A
Coloring options: