HL_6FYY_035

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_035 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2225

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FYY|1|2|C|1499
6FYY|1|2|G|1500
6FYY|1|2|A|1501
6FYY|1|2|G|1502
6FYY|1|2|A|1503
6FYY|1|2|G|1504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

KLLA0F07843p

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p