HL_6G18_014

3D structure

PDB id

6G18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G18_014 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1016

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6G18|1|2|C|618
6G18|1|2|A|619
6G18|1|2|G|620
6G18|1|2|C|621
6G18|1|2|C|622
6G18|1|2|G|623

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain v

Serine/threonine-protein kinase RIO2