HL_6G5I_020

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

6G5I|1|2|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G5I_020 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3306

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6G5I|1|2|A|1113
6G5I|1|2|U|1114
6G5I|1|2|U|1115
6G5I|1|2|C|1116
6G5I|1|2|C|1117
6G5I|1|2|C|1118
6G5I|1|2|A|1119
6G5I|1|2|U|1120

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain b

40S ribosomal protein S27