HL_6G7Z_001

3D structure

PDB id

6G7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme with a shortened DP2 stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6G7Z|1|A|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G7Z_001 not in the Motif Atlas

Geometric match to HL_3U4M_001

Geometric discrepancy: 0.1711

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

6G7Z|1|A|C|21
6G7Z|1|A|U|22
6G7Z|1|A|U|23
6G7Z|1|A|C|24
6G7Z|1|A|G|25
6G7Z|1|A|G|26

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains

Chain B

Lariat-capping ribozyme