HL_6GAW_009

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUAAAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_009 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1747

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6GAW|1|AA|C|342
6GAW|1|AA|U|343
6GAW|1|AA|G|344
6GAW|1|AA|U|345
6GAW|1|AA|A|346
6GAW|1|AA|A|347
6GAW|1|AA|A|348
6GAW|1|AA|A|349
6GAW|1|AA|A|350
6GAW|1|AA|G|351

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AK

28S ribosomal protein S11, mitochondrial

Chain AU

bS21m