HL_6GAW_010

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_010 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1155

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GAW|1|AA|C|376
6GAW|1|AA|G|377
6GAW|1|AA|A|378
6GAW|1|AA|A|379
6GAW|1|AA|A|380
6GAW|1|AA|G|381

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AO

Uncharacterized protein

Chain AU

bS21m

Chain Am

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1