HL_6GAW_017
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAGCACA
- Length
- 7 nucleotides
- Bulged bases
- 6GAW|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAW_017 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.2032
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GAW|1|AA|U|664
6GAW|1|AA|A|665
6GAW|1|AA|G|666
6GAW|1|AA|C|667
6GAW|1|AA|A|668
6GAW|1|AA|C|669
6GAW|1|AA|A|670
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AG
- Mitochondrial ribosomal protein S7
- Chain AI
- 28S ribosomal protein S9, mitochondrial
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
Coloring options: