HL_6GAW_020

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

6GAW|1|AA|C|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_020 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.154

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6GAW|1|AA|A|760
6GAW|1|AA|U|761
6GAW|1|AA|G|762
6GAW|1|AA|A|763
6GAW|1|AA|A|764
6GAW|1|AA|A|765
6GAW|1|AA|C|766
6GAW|1|AA|U|767

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33