HL_6GAW_050

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUUCUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_050 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5746

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GAW|1|BA|G|906
6GAW|1|BA|U|907
6GAW|1|BA|A|908
6GAW|1|BA|U|909
6GAW|1|BA|U|910
6GAW|1|BA|C|911
6GAW|1|BA|U|912
6GAW|1|BA|G|913
6GAW|1|BA|A|914
6GAW|1|BA|C|915

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

Translation initiation factor IF-2, mitochondrial