HL_6GAW_051

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCAAAUAA

Length

9 nucleotides

Bulged bases

6GAW|1|BA|U|950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_051 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2425

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6GAW|1|BA|U|944
6GAW|1|BA|C|945
6GAW|1|BA|C|946
6GAW|1|BA|A|947
6GAW|1|BA|A|948
6GAW|1|BA|A|949
6GAW|1|BA|U|950
6GAW|1|BA|A|951
6GAW|1|BA|A|952

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

uL14m