HL_6GAW_060

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAACCG

Length

8 nucleotides

Bulged bases

6GAW|1|BA|G|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.133

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

6GAW|1|BA|U|1351
6GAW|1|BA|G|1352
6GAW|1|BA|C|1353
6GAW|1|BA|A|1354
6GAW|1|BA|A|1355
6GAW|1|BA|C|1356
6GAW|1|BA|C|1357
6GAW|1|BA|G|1358

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B9

Ribosomal protein