HL_6GAW_061

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAW_061 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1731

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6GAW|1|BA|U|1374
6GAW|1|BA|U|1375
6GAW|1|BA|G|1376
6GAW|1|BA|U|1377
6GAW|1|BA|U|1378
6GAW|1|BA|C|1379
6GAW|1|BA|A|1380

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains