HL_6GAW_068
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAW_068 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.3356
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6GAW|1|BB|A|32
6GAW|1|BB|C|33
6GAW|1|BB|U|34
6GAW|1|BB|G|35
6GAW|1|BB|A|36
6GAW|1|BB|A|37
6GAW|1|BB|A|38
6GAW|1|BB|A|39
6GAW|1|BB|U|40
Current chains
- Chain BB
- tRNA-Phe, mitochondrial
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B4
- 39S ribosomal protein L55, mitochondrial
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bd
- 39S ribosomal protein L40, mitochondrial isoform 1
- Chain Bj
- Mitochondrial ribosomal protein L46
- Chain Bk
- Mitochondrial ribosomal protein L48
Coloring options: